李依民, 张娜, 沈霞, 李欢, 黑小斌, 郭顺星, 张岗. 珍稀药用铁皮石斛4个CIPKs基因的鉴定与表达分析J. 药学学报, 2018,53(2): 304-312. doi: 10.16438/j.0513-4870.2017-1066
引用本文: 李依民, 张娜, 沈霞, 李欢, 黑小斌, 郭顺星, 张岗. 珍稀药用铁皮石斛4个CIPKs基因的鉴定与表达分析J. 药学学报, 2018,53(2): 304-312. doi: 10.16438/j.0513-4870.2017-1066
LI Yi-min, ZHANG Na, SHEN Xia, LI Huan, HEI Xiao-bin, GUO Shun-xing, ZHANG Gang. Identification and expression analysis of four CIPKs genes from a rare and medicinal plant, Dendrobium officinaleJ. Acta Pharmaceutica Sinica, 2018,53(2): 304-312. doi: 10.16438/j.0513-4870.2017-1066
Citation: LI Yi-min, ZHANG Na, SHEN Xia, LI Huan, HEI Xiao-bin, GUO Shun-xing, ZHANG Gang. Identification and expression analysis of four CIPKs genes from a rare and medicinal plant, Dendrobium officinaleJ. Acta Pharmaceutica Sinica, 2018,53(2): 304-312. doi: 10.16438/j.0513-4870.2017-1066

珍稀药用铁皮石斛4个CIPKs基因的鉴定与表达分析

Identification and expression analysis of four CIPKs genes from a rare and medicinal plant, Dendrobium officinale

  • 摘要: 类钙调磷酸酶B蛋白(calcineurin B-like protein,CBL)互作蛋白激酶(CBL-interacting protein kinase,CIPK)通过感应钙信号,在植物生长发育、逆境生理等生命活动中发挥重要作用。本研究利用RACE技术首次从珍稀药用铁皮石斛中克隆到4个CIPK基因cDNA全长,DoCIPK1DoCIPK2DoCIPK3DoCIPK4(GenBank注册号KT957557、KT957558、KT957559和KT957560),编码蛋白分别含473、449、451、440个氨基酸,分子质量依次为53.50、50.93、51.50、50.16 kDa,等电点7.99、9.25、8.81、9.11;与多种植物CIPKs蛋白一致性在70%~90%、69%~80%、78%~93%、66%~82%之间;各含1个蛋白激酶的保守结构域(分别为第21~275、14~268、16~271、12~266位氨基酸)、1个CIPK家族特有的NAF/FISL结构域(335~391、313~370、310~369、305~362)和多个功能基元;4个蛋白均无信号肽或跨膜域,预测主要分布在质膜、内质网等亚细胞水平,与拟南芥AtCIPK24三维结构类似;DoCIPK1、DoCIPK3分别隶属于拟南芥和水稻CIPKs分子进化树的E、A类群,DoCIPK2和DoCIPK4属于C类群;DoCIPK1基因在石斛叶和茎中的相对表达量无显著差异,根中表达量为叶中的0.35倍;DoCIPK3转录本在茎和根中的丰度分别为叶中3.36倍和3.47倍;DoCIPK2DoCIPK4的表达模式相似,二者在叶和茎中的相对表达量无显著差异,根中表达量分别为叶中的2.08倍和7.86倍。DoCIPK1DoCIPK2DoCIPK3DoCIPK4基因克隆、生物信息特征及表达特性为下一步研究基因在铁皮石斛生理适应中的分子功能奠定基础。

     

    Abstract: The calcineurin B-like protein (CBL)-interacting protein kinase (CIPK) plays a vital role in the growth, development, and stresses adaptation in plants by interaction with the calcium signaling. In this study, four full length cDNAs of CIPKs genes, namely DoCIPK1, DoCIPK2, DoCIPK3 and DoCIPK4 (GenBank accession No. KT957557, KT957558, KT957559 and KT957560, respectively) were cloned from the rear and medicinal plant, Dendrobium officinale, by rapid amplification of cDNA ends (RACE) for the first time. The corresponding encoded proteins, consisting of 473, 449, 451 and 440 amino acids (aa), respectively, with a molecular weight of 53.50, 50.93, 51.50 and 50.16 kDa, and an isoelectric point (pI) of 7.99, 9.25, 8.81 and 9.11, respectively, shared 70%-90%, 69%-80%, 78%-93%, and 66%-82% identities CIPKs with various plants. Each deduced protein contained a conserved protein kinase domain (respectively at 21 -275, 14-268, 16-271 and 12-266 aa position), a CIPKs family characteristic NAF/FISL domain (respectively at 335-391, 313-370, 310-369 and 305-362 aa position) and some functional motifs. The four DoCIPK proteins, without signal peptide or transmembrane region, were located in the plasma membrane and endoplasmic reticulum at the subcellular level. The three dimensional structure of the proteins were similar to that of Arabidopsis AtCIPK24. DoCIPK1 and DoCIPK3 were respectively clustered in the group E and A of the Arabidopsis and rice CIPK evolutionary tree, while DoCIPK2 and DoCIPK4 belonged to group C. The relative expression of DoCIPK1 showed no significant difference in the leaves and stems, and its transcripts in the roots was 0.35 fold over that in the leaves. The abundance of DoCIPK3 transcripts in the stems and the roots were 3.36 fold and 3.47 fold higher, respectively, than those in the leaves. DoCIPK2 exhibited similar expression pattern to DoCIPK4. Their relative expression in the leaves and the stems had no apparent difference, and the transcript levels were higher in the roots than that in the leaves, with 2.08 fold and 7.86 fold, respectively. Cloning, bioinformatics analyses, and expression patterns of the four DoCIPK genes provide a basis for functional elucidation of these genes further during the physiological responses in D. officinale.

     

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