朱凤洁, 刘娟, 袁媛, 周骏辉, 俞年军, 黄璐琦. 不同开花期金银花Hsp70基因相关miRNA的表达研究J. 药学学报, 2018,53(8): 1202-1208. doi: 10.16438/j.0513-4870.2018-0389
引用本文: 朱凤洁, 刘娟, 袁媛, 周骏辉, 俞年军, 黄璐琦. 不同开花期金银花Hsp70基因相关miRNA的表达研究J. 药学学报, 2018,53(8): 1202-1208. doi: 10.16438/j.0513-4870.2018-0389
ZHU Feng-jie, LIU Juan, YUAN Yuan, ZHOU Jun-hui, YU Nian-jun, HUANG Lu-qi. Expression analysis of Hsp70-related miRNA in Lonicera japonica Thunb. during different flowering stagesJ. Acta Pharmaceutica Sinica, 2018,53(8): 1202-1208. doi: 10.16438/j.0513-4870.2018-0389
Citation: ZHU Feng-jie, LIU Juan, YUAN Yuan, ZHOU Jun-hui, YU Nian-jun, HUANG Lu-qi. Expression analysis of Hsp70-related miRNA in Lonicera japonica Thunb. during different flowering stagesJ. Acta Pharmaceutica Sinica, 2018,53(8): 1202-1208. doi: 10.16438/j.0513-4870.2018-0389

不同开花期金银花Hsp70基因相关miRNA的表达研究

Expression analysis of Hsp70-related miRNA in Lonicera japonica Thunb. during different flowering stages

  • 摘要: 植物花期调节是其适应逆境的重要机制,热休克蛋白Hsp70(heat shock protein 70)家族是抵抗胁迫的主要分子伴侣之一;在花期的基因调控网络中,miRNA可以作为负调控因子参与转录后基因表达调控。本文通过生物信息学方法,从金银花转录组中获得一条Hsp70基因并结合金银花miRNA库获得一条可能靶向Hsp70基因的新型miRNA。分别对获得的Hsp70基因和miRNA进行生物信息学及在不同开花期的表达进行分析。系统进化树显示获得的Hsp70基因与水稻、拟南芥中的Hsp110亚家族聚为一类;miRNA二级结构预测显示其结构稳定,可靠性高;miRNA与Hsp70基因的结合位点图显示miRNA与Hsp70基因碱基互补中存在两个碱基错配;表达分析显示Hsp70基因与miRNA在不同花期中表达量趋势相反,说明miRNA可能调控Hsp70参与金银花的花发育阶段。本研究为金银花花期调控、响应环境胁迫等机制研究提供新的思路。

     

    Abstract: Plant flowering regulation is an important mechanism to response to environmental stress. Heat shock protein 70 family is one of the main molecular chaperones to resist stress; miRNA can be used as a negative regulator to participate in post-transcriptional gene in flowering network. In this paper, we obtained an Hsp70 gene from Lonicera japonica transcriptome and combined with Lonicera japonica miRNA library to obtain a novel miRNA that may target Hsp70 gene through bioinformatics method. Bioinformatics and expression during different flowering stages of the obtained Hsp70 gene and miRNA were analyzed. Phylogenetic tree showed that the obtained Hsp70 gene was clustered with Hsp110 subfamily in Oryza sativa and Arabidopis thaliana. The prediction of miRNA secondary structure showed its stable structure and high reliability. The binding site map showed that there were two base mismatches between sequences of miRNA and Hsp70 gene. The expression analysis showed that the expression of Hsp70 and miRNA in different flowering stages had opposite trends, indicating that miRNA might regulate Hsp70 to participate in the flowering stages of Lonicera japonica. This study provided new ideas for Lonicera japonica flowering regulation and response to environmental stress mechanisms.

     

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