怀浩, 董林林, 宁康, 侯聪, 代飞, 刘霞, 汪鋆植, 陈士林. 中药火麻仁基原植物Hsp20基因家族鉴定及表达分析J. 药学学报, 2022,57(4): 1203-1215. doi: 10.16438/j.0513-4870.2021-1509
引用本文: 怀浩, 董林林, 宁康, 侯聪, 代飞, 刘霞, 汪鋆植, 陈士林. 中药火麻仁基原植物Hsp20基因家族鉴定及表达分析J. 药学学报, 2022,57(4): 1203-1215. doi: 10.16438/j.0513-4870.2021-1509
HUAI Hao, DONG Lin-lin, NING Kang, HOU Cong, DAI Fei, LIU Xia, WANG Jun-zhi, CHEN Shi-lin. Genome-wide identification of the Hsp20 gene family in Cannabis sativa and its expression profileJ. Acta Pharmaceutica Sinica, 2022,57(4): 1203-1215. doi: 10.16438/j.0513-4870.2021-1509
Citation: HUAI Hao, DONG Lin-lin, NING Kang, HOU Cong, DAI Fei, LIU Xia, WANG Jun-zhi, CHEN Shi-lin. Genome-wide identification of the Hsp20 gene family in Cannabis sativa and its expression profileJ. Acta Pharmaceutica Sinica, 2022,57(4): 1203-1215. doi: 10.16438/j.0513-4870.2021-1509

中药火麻仁基原植物Hsp20基因家族鉴定及表达分析

Genome-wide identification of the Hsp20 gene family in Cannabis sativa and its expression profile

  • 摘要: Hsp20 (heat shock protein 20)基因家族在植物生长发育和胁迫响应中发挥着重要的作用。为探究大麻(Cannabis sativa L.Hsp20CsHsp20)基因的功能,本研究在全基因组和转录组水平上采用生物信息学手段对CsHsp20基因家族进行系统性研究。结果表明,在大麻中鉴定到35个CsHsp20基因家族成员(CsHsp20-1~CsHsp20-35),分布在9条染色体上,属于10个亚家族,同一亚家族成员之间蛋白基序分布相似。多种激素和胁迫响应顺式作用元件存在于CsHsp20基因的启动子区,表明其可参与植物的生长发育和多种胁迫响应。蛋白互作分析表明CsHsp20蛋白与Hsp家族其他成员之间存在互作关系且受转录因子Hop和HSFA2的调控。转录组数据表明在大麻的不同组织器官及不同发育时期中CsHsp20基因家族成员表达水平存在差异,主要在火麻仁及其成熟期高表达,表明CsHsp20家族成员可调控火麻仁的生长发育。本研究为CsHsp20基因家族功能研究和火麻仁基原植物的定向培育奠定了基础。

     

    Abstract: Theheat shock protein 20(Hsp20) gene family plays an important role in regulating the stress response and plant development. The characteristics of Hsp20 in Cannabis sativa (CsHsp20), however, are still unclear. We systematically analyzed the CsHsp20 family based on the whole-genome and transcriptome database of Cannabis sativa using a series of bioinformatical tools. A total of 35 CsHsp20 genes (CsHsp20-1-CsHsp20-35) were identified in Cannabis sativa; they distribute onto 9 chromosomes and belong to 10 subfamilies, each with similar protein motifs. The promoter region of the CsHsp20 genes contains a variety of hormone-responsive and stress-responsive cis-elements, indicating that CsHsp20 genes are involved in plant growth and development and various stress responses. Protein interaction analysis showed that CsHsp20 proteins interacted with other members of the Hsp family and were regulated by transcription factors Hop and HSFA2. Transcriptome data showed that the expression levels of CsHsp20 genes were different among different tissues of Cannabis sativa and across different developmental stages. CsHsp20 genes were highly expressed mainly in hemp seed and its maturation stage, suggesting that CsHsp20 gene family members regulate the growth and development of hemp seed. Our research lays a foundation for the studying the function of CsHsp20 gene family and the directional cultivation of high-quality non-psychoactive medicinal cannabis.

     

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