张双华, 侯聪, 程宇飞, 宁康, 汪鋆植, 董林林. 三七AP2/ERF基因家族鉴定及PnDREB84基因功能初探J. 药学学报, 2023, 58(11): 3428-3438. DOI: 10.16438/j.0513-4870.2023-0203
引用本文: 张双华, 侯聪, 程宇飞, 宁康, 汪鋆植, 董林林. 三七AP2/ERF基因家族鉴定及PnDREB84基因功能初探J. 药学学报, 2023, 58(11): 3428-3438. DOI: 10.16438/j.0513-4870.2023-0203
ZHANG Shuang-hua, HOU Cong, CHENG Yu-fei, NING Kang, WANG Jun-zhi, DONG Lin-lin. Identification and analysis of AP2/ERF gene family of Panax notoginseng and function of PnDREB84 geneJ. Acta Pharmaceutica Sinica, 2023, 58(11): 3428-3438. DOI: 10.16438/j.0513-4870.2023-0203
Citation: ZHANG Shuang-hua, HOU Cong, CHENG Yu-fei, NING Kang, WANG Jun-zhi, DONG Lin-lin. Identification and analysis of AP2/ERF gene family of Panax notoginseng and function of PnDREB84 geneJ. Acta Pharmaceutica Sinica, 2023, 58(11): 3428-3438. DOI: 10.16438/j.0513-4870.2023-0203

三七AP2/ERF基因家族鉴定及PnDREB84基因功能初探

Identification and analysis of AP2/ERF gene family of Panax notoginseng and function of PnDREB84 gene

  • 摘要: AP2/ERF基因家族是植物界中的最大转录因子家族之一, 在响应生物与非生物胁迫、参与对植物激素的应答及植物生长发育过程具有重要的作用。本研究利用生物信息学方法对三七AP2/ERF家族进行鉴定, 并分析该家族的蛋白理化性质与结构、系统进化关系、表达模式及PnDREB4基因的功能。结果表明, 在三七中鉴定到140个AP2/ERF家族成员, 分为DREB、ERF、AP2、RAV、Soloist五个亚族, 各亚族间蛋白理化性质和基序分布相似。尖孢镰刀菌侵染三七植株, 其AP2/ERF家族基因中有34个差异表达基因, 19个基因表达上调, 其中PnDREB84在0~96 h范围内随着尖孢镰刀菌侵染时间的延长表达量上调。低温4 ℃胁迫后, 超表达PnDREB84基因的三七植株, 其ABA和SA激素的含量增加。结果表明, PnDREB84基因在生物胁迫和非生物胁迫过程中发挥双重调控作用, PnDREB84基因可作为三七抗逆新品种培育的潜在分子标记。三七AP2/ERF转录因子的鉴定及PnDREB84基因功能分析为三七抗逆机制解析及新品种培育提供数据支撑。

     

    Abstract: The AP2/ERF gene family is one of the largest transcription factor families in the plant kingdom, and plays an important role in response to biological and abiotic stresses, plant hormone responses, and plant growth and development. In this study, the AP2/ERF family of Panax notoginseng was identified by bioinformatics methods, and the physicochemical properties, structure, phylogenetic relationship, expression pattern and function of PnDREB4 gene of the family were analyzed. The results showed that 140 AP2/ERF family members were identified in P. notoginseng, which were divided into DREB, ERF, AP2, RAV and Sololit subgroups. The physicochemical properties and motifs of proteins were similar among the subgroups. There were 34 differentially expressed genes in the AP2/ERF family of Fusarium oxysporum infected P. notoginseng plants, and 19 genes were up-regulated. The expression level of PnDREB84 was up-regulated with the extension of Fusarium oxysporum infection time in the range of 0-96 h. The content of ABA and SA in P. notoginseng plants overexpressing PnDREB84 gene increased after 4 ℃ stress. The results showed that PnDREB84 gene plays a dual regulatory role in the process of biological stress and abiotic stress. PnDREB84 gene can be used as a potential molecular marker for the breeding of new varieties of P. notoginseng. The identification of AP2/ERF transcription factor and function analysis of PnDREB84 gene of P. notoginseng provided data support for the analysis of stress resistance mechanism of P. notoginseng and the breeding of new varieties.

     

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