Cε3-Cε4蛋白核酸适配子筛选与鉴定
Screening and characterization of aptamers of Cε3−Cε4 protein
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摘要:
设计并合成随机ssDNA文库, 以硝酸纤维素膜为筛选介质, 利用SELEX技术筛选人Cε3−Cε4蛋白特异性高亲和力核酸适配子, 通过对退火温度、循环次数及靶蛋白与ssDNA摩尔比等关键参数进行优化, 建立了适合的筛选体系。ELISA测定各适配子亲和力, 获得了人Cε3−Cε4蛋白高亲和力、高特异性适配子, 并分析了其一级结构和二级结构。以所获高亲和力适配子分别作为捕获适配子和检测适配子, 建立了酶联适配子吸附试验 (enzyme-linked aptamers sorption assay, ELASA) 方法, 灵敏度达到120 ng·mL−1, 可用于人IgE的定量检测。
Abstract:In order to obtain nucleotides aptamers bind to IgE, 80 bp nucleotides single-stranded DNA library containing 40 random nucleotides was designed and synthesized. Oligonucleotides that bind to human Cε3−Cε4 protein were isolated from ssDNA pools by the systematic evolution of ligands by exponential enrichment (SELEX) method using nitrocellulose filters as screening medium. Through the optimization of critical PCR and asymmetric PCR parameters including annealing temperature, cycles, and molar ratios of target protein and ssDNA etc, a suitable screening system was established. The aptamers of Cε3−Cε4 protein with high affinity and high specificity were identified by ELISA with biotin-streptavidin-horseradish peroxidase system, and its primary sequence and second structure were analyzed by DNAMAN package and DNA folding sever after being cloned and sequenced. Moreover, target protein was bound to one aptamer and another aptamer modified with biotion together forming a sandwich-like complex, which was captured in microwell to detect IgE concentration using the optimal combination in the sandwich method named enzyme-linked aptamers sorption assay (ELASA). The method could be used for the quantitative detection of human IgE, and whose sensitivity reached to 120 ng·mL−1.
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