Abstract: AimThe index F and relative index F_r of chromatographic fingerprints were firstly proposed to indicate how bountiful was the information in traditional Chinese medicines chromatographic fingerprints，how better was the separation effect，how high was the peak signal and how equal were the peak areas. MethodsThe index F and relative index F_r of chromatographic fingerprints were firstly applied to evaluate the chromatographic fingerprints results of traditional Chinese medicines determined by the reversed-phase high performance liquid chromatographic method and high performance capillary electrophoresis. ResultsThe Shegan Kangbingdu injection and all its traditional Chinese medicines ingredients had been evaluated by F and F_r, so did for the HPLC fingerprints of Radix salviae miltiorrhizae reported in literature. As the same time, the F and F_r of the capillary electrophoresis fingerprints of Folium isatidis, Rhizoma belamcandae and compound liquorice tablets were successfully determined. As far as F was concerned, there was no evident difference between HPLC and capillary electrophoresis (CE), but the F_r values came from CE was usually a thousand times more than that from HPLC. ConclusionThe F and F_r can be applied to evaluate objectively, simply and thoroughly the chromatographic fingerprints.